Index

A

additional_graphs() (in module openalea.cnwgrass.integration.tools) Ag (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) age (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementInitCompartments attribute) (openalea.cnwgrass.morphogenesis.parameters.ElementInit attribute) AGE_EFFECT_SENESCENCE (in module openalea.cnwgrass.senescence.parameters) age_from_flowering (openalea.cnwgrass.cnmetabolism.model.Grains attribute) age_teq (openalea.cnwgrass.morphogenesis.parameters.ElementInit attribute) ALL_STATE_PARAMETERS (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) amino_acids (openalea.cnwgrass.cnmetabolism.model.HiddenZone attribute) (openalea.cnwgrass.cnmetabolism.model.Phloem attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.cnmetabolism.model.Roots attribute) (openalea.cnwgrass.growth.parameters.OrganInit attribute) (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementInitCompartments attribute) (openalea.cnwgrass.morphogenesis.parameters.ElementInit attribute) (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) AMINO_ACIDS_C_RATIO (openalea.cnwgrass.cnmetabolism.model.EcophysiologicalConstants attribute) (openalea.cnwgrass.growth.parameters.Parameters attribute) Amino_Acids_import (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) AMINO_ACIDS_MOLAR_MASS_C_RATIO (openalea.cnwgrass.cnmetabolism.model.EcophysiologicalConstants attribute) AMINO_ACIDS_MOLAR_MASS_N_RATIO (in module openalea.cnwgrass.growth.parameters) (openalea.cnwgrass.cnmetabolism.model.EcophysiologicalConstants attribute) (openalea.cnwgrass.cnmetabolism.model.Grains attribute) AMINO_ACIDS_N_RATIO (in module openalea.cnwgrass.hydraulics.parameters) (openalea.cnwgrass.cnmetabolism.model.EcophysiologicalConstants attribute) (openalea.cnwgrass.growth.parameters.Parameters attribute) area_prim (openalea.cnwgrass.gasexchange.parameters.ElementDefaultProperties attribute) axes (openalea.cnwgrass.cnmetabolism.model.Plant attribute) (openalea.cnwgrass.hydraulics.model.Plant attribute) AXES_FLUXES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute)

AXES_INDEXES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) axes_inputs (openalea.cnwgrass.gasexchange.simulation.Simulation attribute) AXES_INTEGRATIVE_VARIABLES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) AXES_INTERMEDIATE_VARIABLES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) AXES_POSTPROCESSING_VARIABLES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) AXES_RUN_POSTPROCESSING_VARIABLES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) AXES_RUN_VARIABLES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) AXES_STATE (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) AXES_STATE_PARAMETERS (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) AXES_T_INDEXES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) AXES_TOPOLOGY_COLUMNS (in module openalea.cnwgrass.integration.build_outputs) (in module openalea.cnwgrass.senescence.converter) AXES_VARIABLES (in module openalea.cnwgrass.cnmetabolism.converter) (in module openalea.cnwgrass.hydraulics.converter) (in module openalea.cnwgrass.integration.build_outputs) Axis (class in openalea.cnwgrass.cnmetabolism.model) (class in openalea.cnwgrass.hydraulics.model) AXIS_INIT_COMPARTMENTS (in module openalea.cnwgrass.hydraulics.parameters) axis_inputs (openalea.cnwgrass.growth.simulation.Simulation attribute) (openalea.cnwgrass.morphogenesis.simulation.Simulation attribute) AXIS_PARAMETERS (in module openalea.cnwgrass.hydraulics.parameters) AXIS_TOPOLOGY_COLUMNS (in module openalea.cnwgrass.gasexchange.converter) AxisInitCompartments (class in openalea.cnwgrass.hydraulics.parameters) AxisParameters (class in openalea.cnwgrass.hydraulics.parameters)

B

BETA (openalea.cnwgrass.growth.parameters.Parameters attribute) Beta_function() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method)

Beta_function_internode() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) build_outputs_df_from_MTG() (openalea.cnwgrass.integration.build_outputs.BuildOutputs method) BuildOutputs (class in openalea.cnwgrass.integration.build_outputs)

C

C_AMM_UPT (openalea.cnwgrass.respiration.model.RespirationModel attribute) C_exudation (openalea.cnwgrass.cnmetabolism.model.Roots attribute) C_MOLAR_MASS (in module openalea.cnwgrass.growth.parameters) (openalea.cnwgrass.cnmetabolism.model.EcophysiologicalConstants attribute) C_NFIX (openalea.cnwgrass.respiration.model.RespirationModel attribute) C_NIT_RED (openalea.cnwgrass.respiration.model.RespirationModel attribute) C_NIT_UPT (openalea.cnwgrass.respiration.model.RespirationModel attribute) calculate_aggregated_variables() (openalea.cnwgrass.cnmetabolism.model.Axis method) (openalea.cnwgrass.cnmetabolism.model.HiddenZone method) (openalea.cnwgrass.cnmetabolism.model.Organ method) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrgan method) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement method) (openalea.cnwgrass.cnmetabolism.model.Phytomer method) (openalea.cnwgrass.cnmetabolism.model.Plant method) (openalea.cnwgrass.cnmetabolism.model.Population method) (openalea.cnwgrass.cnmetabolism.model.Roots method) (openalea.cnwgrass.hydraulics.model.Axis method) (openalea.cnwgrass.hydraulics.model.HiddenZone method) (openalea.cnwgrass.hydraulics.model.Organ method) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrgan method) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement method) (openalea.cnwgrass.hydraulics.model.Phytomer method) (openalea.cnwgrass.hydraulics.model.Plant method) (openalea.cnwgrass.hydraulics.model.Population method) calculate_amino_acids_derivative() (openalea.cnwgrass.cnmetabolism.model.HiddenZone method) (openalea.cnwgrass.cnmetabolism.model.Phloem static method) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement method) (openalea.cnwgrass.cnmetabolism.model.Roots method) calculate_Amino_Acids_import() (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement static method) calculate_C_g() (openalea.cnwgrass.cnmetabolism.postprocessing.Element static method) (openalea.cnwgrass.cnmetabolism.postprocessing.HiddenZone static method) calculate_Ci() (in module openalea.cnwgrass.gasexchange.model) calculate_coleo_Lmax() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) calculate_coleoptile_emergence() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel static method) calculate_Conc_Amino_Acids() (openalea.cnwgrass.cnmetabolism.postprocessing.Element static method) (openalea.cnwgrass.cnmetabolism.postprocessing.HiddenZone static method) calculate_conc_amino_acids() (openalea.cnwgrass.cnmetabolism.postprocessing.Phloem static method) calculate_Conc_Amino_Acids() (openalea.cnwgrass.cnmetabolism.postprocessing.Roots static method) calculate_conc_cytokinins() (openalea.cnwgrass.cnmetabolism.postprocessing.Element static method) (openalea.cnwgrass.cnmetabolism.postprocessing.Roots static method) calculate_conc_fructan() (openalea.cnwgrass.cnmetabolism.postprocessing.Element static method) (openalea.cnwgrass.cnmetabolism.postprocessing.HiddenZone static method) calculate_Conc_Nitrates() (openalea.cnwgrass.cnmetabolism.model.Soil method) (openalea.cnwgrass.cnmetabolism.postprocessing.Element static method) (openalea.cnwgrass.cnmetabolism.postprocessing.Roots static method) calculate_conc_protein() (openalea.cnwgrass.cnmetabolism.postprocessing.HiddenZone static method) calculate_conc_proteins() (openalea.cnwgrass.cnmetabolism.postprocessing.Element static method) calculate_conc_solutes_mass() (openalea.cnwgrass.hydraulics.postprocessing.HiddenZone static method) calculate_conc_solutes_vol() (openalea.cnwgrass.hydraulics.postprocessing.HiddenZone static method) calculate_conc_starch() (openalea.cnwgrass.cnmetabolism.postprocessing.Element static method) calculate_conc_sucrose() (openalea.cnwgrass.cnmetabolism.postprocessing.Element static method) (openalea.cnwgrass.cnmetabolism.postprocessing.HiddenZone static method) (openalea.cnwgrass.cnmetabolism.postprocessing.Phloem static method) (openalea.cnwgrass.cnmetabolism.postprocessing.Roots static method) calculate_conc_triosesP() (openalea.cnwgrass.cnmetabolism.postprocessing.Element static method) calculate_cumulated_internode_length() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel static method) calculate_cumulated_thermal_time() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) calculate_cytokinins_derivative() (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement method) (openalea.cnwgrass.cnmetabolism.model.Roots method) calculate_cytokinins_import() (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement static method) calculate_D_cytokinins() (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement method) calculate_D_Fructan() (openalea.cnwgrass.cnmetabolism.model.HiddenZone method) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement method) calculate_D_proteins() (openalea.cnwgrass.cnmetabolism.model.Endosperm static method) calculate_D_Proteins() (openalea.cnwgrass.cnmetabolism.model.HiddenZone method) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement method) calculate_D_starch() (openalea.cnwgrass.cnmetabolism.model.Endosperm static method) calculate_D_Starch() (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement method) calculate_delta_emerged_tissue_mstruct() (openalea.cnwgrass.growth.model.GrowthModel static method) calculate_delta_internode_enclosed_mstruct() (openalea.cnwgrass.growth.model.GrowthModel method) calculate_delta_internode_enclosed_mstruct_postL() (openalea.cnwgrass.growth.model.GrowthModel method) calculate_delta_internode_L_postL() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) calculate_delta_internode_L_preL() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) calculate_delta_leaf_enclosed_mstruct() (openalea.cnwgrass.growth.model.GrowthModel method) (openalea.cnwgrass.growth.model.GrowthModelHydraulics method) calculate_delta_leaf_enclosed_mstruct_postE() (openalea.cnwgrass.growth.model.GrowthModel method) calculate_delta_mstruct_root() (openalea.cnwgrass.senescence.model.SenescenceModel class method) calculate_delta_mstruct_shoot() (openalea.cnwgrass.senescence.model.SenescenceModel class method) calculate_delta_Nstruct() (openalea.cnwgrass.growth.model.GrowthModel method) calculate_delta_organ_dimensions() (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement static method) calculate_delta_organ_dimensions_elastic() (openalea.cnwgrass.hydraulics.model.HiddenZone static method) calculate_delta_organ_dimensions_plastic() (openalea.cnwgrass.hydraulics.model.HiddenZone static method) calculate_delta_turgor_water_potential() (openalea.cnwgrass.hydraulics.model.HiddenZone static method) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement static method) calculate_delta_water_content() (openalea.cnwgrass.hydraulics.model.HiddenZone static method) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement static method) calculate_deltaL_postE() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) calculate_deltaL_preE() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) (openalea.cnwgrass.morphogenesis.model.MorphogenesisModelHydraulics method) calculate_dry_mass() (openalea.cnwgrass.cnmetabolism.postprocessing.Element static method) (openalea.cnwgrass.cnmetabolism.postprocessing.Endosperm static method) (openalea.cnwgrass.cnmetabolism.postprocessing.Grains static method) (openalea.cnwgrass.cnmetabolism.postprocessing.HiddenZone static method) calculate_element_age_teq() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel static method) calculate_emerged_coleo_L() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel static method) calculate_emerged_internode_L() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel static method) calculate_emerged_sheath_L() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel static method) calculate_end_internode_elongation() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) calculate_export() (openalea.cnwgrass.growth.model.GrowthModel static method) calculate_Export_Amino_Acids() (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement method) (openalea.cnwgrass.cnmetabolism.model.Roots method) calculate_Export_cytokinins() (openalea.cnwgrass.cnmetabolism.model.Roots method) calculate_Export_Nitrates() (openalea.cnwgrass.cnmetabolism.model.Roots method) calculate_export_sucrose() (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement method) calculate_extensibility_temperature() (openalea.cnwgrass.hydraulics.model.HiddenZone static method) calculate_exudation() (openalea.cnwgrass.cnmetabolism.model.Roots static method) calculate_forced_relative_delta_green_area() (openalea.cnwgrass.senescence.model.SenescenceModel class method) calculate_fructan_derivative() (openalea.cnwgrass.cnmetabolism.model.HiddenZone method) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement method) calculate_fructan_g() (openalea.cnwgrass.cnmetabolism.postprocessing.Element static method) (openalea.cnwgrass.cnmetabolism.postprocessing.HiddenZone static method) calculate_growing_temperature() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel static method) calculate_hidden_lamina_L() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel static method) calculate_hiddenzone_length() (openalea.cnwgrass.hydraulics.model.HiddenZone static method) calculate_if_element_is_over() (openalea.cnwgrass.senescence.model.SenescenceModel class method) calculate_init_cytokinins_emerged_tissue() (openalea.cnwgrass.growth.model.GrowthModel method) calculate_init_internode_elongation() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) calculate_initial_volume() (openalea.cnwgrass.hydraulics.model.HiddenZone static method) calculate_internode_distance_to_emerge() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel static method) calculate_internode_Lmax() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) calculate_internode_pseudo_age() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel static method) calculate_internode_visibility() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel static method) calculate_lamina_L() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel static method) calculate_lamina_Lmax() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel static method) (openalea.cnwgrass.morphogenesis.model.MorphogenesisModelHydraulics method) calculate_leaf_emergence() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel static method) calculate_leaf_Lmax() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) calculate_leaf_pseudo_age() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) (openalea.cnwgrass.morphogenesis.model.MorphogenesisModelHydraulics method) calculate_leaf_pseudostem_length() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel static method) calculate_leaf_Wmax() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) calculate_LER() (openalea.cnwgrass.hydraulics.postprocessing.HiddenZone static method) calculate_ligule_height() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel static method) calculate_Loading_Amino_Acids() (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement method) calculate_Loading_Sucrose() (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement method) calculate_LSIW() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) calculate_LSSW() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) calculate_mean_conc_sucrose() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel static method) calculate_mineral_plant() (openalea.cnwgrass.growth.model.GrowthModel method) calculate_mineralisation() (openalea.cnwgrass.cnmetabolism.model.Soil static method) calculate_moistening() (openalea.cnwgrass.cnmetabolism.model.Endosperm static method) calculate_N_content_total() (openalea.cnwgrass.senescence.model.SenescenceModel class method) calculate_N_g() (openalea.cnwgrass.cnmetabolism.postprocessing.Element static method) (openalea.cnwgrass.cnmetabolism.postprocessing.HiddenZone static method) calculate_nitrates_derivative() (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement method) (openalea.cnwgrass.cnmetabolism.model.Roots method) (openalea.cnwgrass.cnmetabolism.model.Soil static method) calculate_Nitrates_import() (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement static method) calculate_organ_volume() (openalea.cnwgrass.hydraulics.model.HiddenZone static method) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement static method)

calculate_osmotic_water_potential() (openalea.cnwgrass.hydraulics.model.HiddenZone static method) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement static method) calculate_photosynthesis() (in module openalea.cnwgrass.gasexchange.model) calculate_protein_N_mass() (openalea.cnwgrass.cnmetabolism.postprocessing.Endosperm static method) (openalea.cnwgrass.cnmetabolism.postprocessing.Grains static method) calculate_proteins_derivative() (openalea.cnwgrass.cnmetabolism.model.Endosperm static method) (openalea.cnwgrass.cnmetabolism.model.Grains static method) (openalea.cnwgrass.cnmetabolism.model.HiddenZone method) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement method) calculate_proteins_g() (openalea.cnwgrass.cnmetabolism.postprocessing.HiddenZone static method) calculate_ratio_DZ_postE() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) (openalea.cnwgrass.morphogenesis.model.MorphogenesisModelHydraulics method) calculate_ratio_mstruct_DM() (openalea.cnwgrass.growth.model.GrowthModel static method) calculate_ratio_non_structural() (openalea.cnwgrass.cnmetabolism.postprocessing.Element static method) calculate_ratio_WC_mstruct() (openalea.cnwgrass.hydraulics.model.Axis static method) calculate_Regul_S_Fructan() (openalea.cnwgrass.cnmetabolism.model.HiddenZone method) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement method) calculate_regul_transpiration() (openalea.cnwgrass.cnmetabolism.model.Roots static method) calculate_relative_delta_green_area() (openalea.cnwgrass.senescence.model.SenescenceModel class method) calculate_relative_delta_mstruct_roots() (openalea.cnwgrass.senescence.model.SenescenceModel class method) calculate_relative_delta_senesced_length() (openalea.cnwgrass.senescence.model.SenescenceModel class method) calculate_remobilisation() (openalea.cnwgrass.senescence.model.SenescenceModel class method) calculate_remobilisation_proteins() (openalea.cnwgrass.senescence.model.SenescenceModel class method) calculate_RER() (openalea.cnwgrass.cnmetabolism.postprocessing.HiddenZone static method) calculate_resistance() (openalea.cnwgrass.hydraulics.model.HiddenZone static method) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement static method) calculate_roots_mstruct_growth() (openalea.cnwgrass.growth.model.GrowthModel method) (openalea.cnwgrass.growth.model.GrowthModelHydraulics method) calculate_roots_s_mstruct_sucrose() (openalea.cnwgrass.growth.model.GrowthModel method) calculate_roots_senescence() (openalea.cnwgrass.senescence.model.SenescenceModel class method) calculate_S_amino_acids() (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement method) (openalea.cnwgrass.cnmetabolism.model.Roots method) calculate_S_cytokinins() (openalea.cnwgrass.cnmetabolism.model.Roots method) calculate_S_Fructan() (openalea.cnwgrass.cnmetabolism.model.HiddenZone method) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement method) calculate_S_grain_starch() (openalea.cnwgrass.cnmetabolism.model.Grains method) calculate_S_grain_structure() (openalea.cnwgrass.cnmetabolism.model.Grains method) calculate_s_mstruct_sucrose() (openalea.cnwgrass.growth.model.GrowthModel method) calculate_s_Nstruct_amino_acids() (openalea.cnwgrass.growth.model.GrowthModel static method) calculate_S_proteins() (openalea.cnwgrass.cnmetabolism.model.Grains static method) (openalea.cnwgrass.cnmetabolism.model.HiddenZone method) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement method) calculate_S_Starch() (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement method) calculate_S_Sucrose() (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement method) calculate_SAM_GA() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) calculate_SAM_primodia() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) calculate_sheath_Lmax() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel static method) calculate_sheath_mstruct() (openalea.cnwgrass.growth.model.GrowthModel static method) calculate_short_internode_Lmax() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) calculate_SL_ratio() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) calculate_SLA() (openalea.cnwgrass.cnmetabolism.postprocessing.Element static method) calculate_SLN() (openalea.cnwgrass.cnmetabolism.postprocessing.Element static method) calculate_SLN_nonstruct() (openalea.cnwgrass.cnmetabolism.postprocessing.Element static method) calculate_SRWC() (openalea.cnwgrass.hydraulics.model.Soil static method) calculate_SSLW() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) calculate_starch_derivative() (openalea.cnwgrass.cnmetabolism.model.Endosperm static method) (openalea.cnwgrass.cnmetabolism.model.Grains static method) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement method) calculate_starch_g() (openalea.cnwgrass.cnmetabolism.postprocessing.Endosperm static method) calculate_structural_dry_mass() (openalea.cnwgrass.cnmetabolism.model.Grains static method) calculate_structure_derivative() (openalea.cnwgrass.cnmetabolism.model.Grains static method) calculate_sucrose_derivative() (openalea.cnwgrass.cnmetabolism.model.HiddenZone method) (openalea.cnwgrass.cnmetabolism.model.Phloem static method) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement method) (openalea.cnwgrass.cnmetabolism.model.Roots method) calculate_surfacic_nitrogen() (in module openalea.cnwgrass.gasexchange.model) calculate_surfacic_non_structural() (openalea.cnwgrass.cnmetabolism.postprocessing.Element static method) calculate_surfacic_nonstructural_nitrogen() (in module openalea.cnwgrass.gasexchange.model) calculate_surfacic_nonstructural_nitrogen_Farquhar() (in module openalea.cnwgrass.gasexchange.model) calculate_surfacic_photosynthetic_proteins() (in module openalea.cnwgrass.gasexchange.model) calculate_surfacic_WSC() (in module openalea.cnwgrass.gasexchange.model) calculate_temperature_effect_on_conductivity() (openalea.cnwgrass.cnmetabolism.model.Plant static method) (openalea.cnwgrass.cnmetabolism.model.Soil static method) calculate_temperature_effect_on_growth() (openalea.cnwgrass.cnmetabolism.model.Endosperm method) (openalea.cnwgrass.cnmetabolism.model.Grains method) calculate_temperature_effect_on_Vmax() (openalea.cnwgrass.cnmetabolism.model.Plant static method) (openalea.cnwgrass.cnmetabolism.model.Soil static method) calculate_time_equivalent_Tref() (openalea.cnwgrass.hydraulics.model.HiddenZone static method) (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) calculate_Total_Organic_Nitrogen() (openalea.cnwgrass.cnmetabolism.model.HiddenZone static method) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement static method) (openalea.cnwgrass.cnmetabolism.model.Roots static method) calculate_total_Photosynthesis() (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement static method) calculate_Total_Transpiration() (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement static method) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement static method) calculate_total_water_influx() (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement static method) calculate_triosesP_derivative() (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement method) calculate_Unloading_Amino_Acids() (openalea.cnwgrass.cnmetabolism.model.HiddenZone method) (openalea.cnwgrass.cnmetabolism.model.Roots method) calculate_Unloading_Sucrose() (openalea.cnwgrass.cnmetabolism.model.HiddenZone method) (openalea.cnwgrass.cnmetabolism.model.Roots method) calculate_update_internode_Lmax() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) calculate_update_leaf_Lmax() (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) calculate_Uptake_Nitrates() (openalea.cnwgrass.cnmetabolism.model.Roots method) calculate_volume() (openalea.cnwgrass.hydraulics.model.HiddenZone static method) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement static method) calculate_water_content_derivative() (openalea.cnwgrass.hydraulics.model.Soil method) calculate_water_flux() (openalea.cnwgrass.hydraulics.model.HiddenZone static method) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement static method) calculate_water_potential() (openalea.cnwgrass.hydraulics.model.HiddenZone static method) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement static method) (openalea.cnwgrass.hydraulics.model.Soil static method) calculate_WSC_g() (openalea.cnwgrass.cnmetabolism.postprocessing.Element static method) (openalea.cnwgrass.cnmetabolism.postprocessing.Grains static method) (openalea.cnwgrass.cnmetabolism.postprocessing.HiddenZone static method) (openalea.cnwgrass.cnmetabolism.postprocessing.Phloem static method) (openalea.cnwgrass.cnmetabolism.postprocessing.Roots static method) calculate_xylem_water_potential() (openalea.cnwgrass.hydraulics.model.Xylem static method) CARIBU_OUTPUTS (in module openalea.cnwgrass.integration.caribu_facade) CaribuFacade (class in openalea.cnwgrass.integration.caribu_facade) CELSIUS_2_KELVIN (in module openalea.cnwgrass.hydraulics.parameters) Chaff (class in openalea.cnwgrass.cnmetabolism.model) chaff (openalea.cnwgrass.cnmetabolism.model.Phytomer attribute) ChaffElement (class in openalea.cnwgrass.cnmetabolism.model) CMIN_UPT (openalea.cnwgrass.respiration.model.RespirationModel attribute) CNMETABOLISM_ATTRIBUTES_MAPPING (in module openalea.cnwgrass.integration.cnmetabolism_facade) CNMETABOLISM_CLASSES_TO_DATAFRAME_ORGANS_MAPPING (in module openalea.cnwgrass.cnmetabolism.converter) CNMetabolismFacade (class in openalea.cnwgrass.integration.cnmetabolism_facade) cohorts (openalea.cnwgrass.cnmetabolism.model.HiddenZone attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.cnmetabolism.model.Phytomer attribute) (openalea.cnwgrass.cnmetabolism.model.Plant attribute) (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.model.Phytomer attribute) (openalea.cnwgrass.hydraulics.model.Plant attribute) cohorts_replications (openalea.cnwgrass.cnmetabolism.model.HiddenZone attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.cnmetabolism.model.Phytomer attribute) (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.model.Phytomer attribute) color_MTG_Nitrogen() (in module openalea.cnwgrass.integration.tools) combine_dataframes_inplace() (in module openalea.cnwgrass.integration.tools) compare_actual_to_desired() (in module openalea.cnwgrass.integration.tools) conc_cytokinins (openalea.cnwgrass.growth.parameters.OrganInit attribute) (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) Conc_Nitrates_Soil (openalea.cnwgrass.cnmetabolism.model.Soil attribute) conc_sucrose_offset (openalea.cnwgrass.growth.parameters.Parameters attribute) (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) constant_Conc_Nitrates (openalea.cnwgrass.cnmetabolism.model.Soil attribute) CONVERSION_FACTOR_20_TO_12 (in module openalea.cnwgrass.growth.parameters) CPHLOEM (openalea.cnwgrass.respiration.model.RespirationModel attribute) culm_density (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) cytokinins (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.cnmetabolism.model.Roots attribute) (openalea.cnwgrass.growth.parameters.OrganInit attribute) (openalea.cnwgrass.morphogenesis.parameters.ElementInit attribute) cytokinins_import (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute)

D

D_cytokinins (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) D_Fructan (openalea.cnwgrass.cnmetabolism.model.HiddenZone attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) D_proteins (openalea.cnwgrass.cnmetabolism.model.Endosperm attribute) D_Proteins (openalea.cnwgrass.cnmetabolism.model.HiddenZone attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) D_starch (openalea.cnwgrass.cnmetabolism.model.Endosperm attribute) D_Starch (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) DATAFRAME_TO_CNMETABOLISM_ELEMENTS_NAMES_MAPPING (in module openalea.cnwgrass.cnmetabolism.converter) DATAFRAME_TO_hydraulics_ELEMENTS_NAMES_MAPPING (in module openalea.cnwgrass.hydraulics.converter) DEFAULT_RATIO_N_MSTRUCT (in module openalea.cnwgrass.senescence.parameters) DELTA_CONVERGENCE (in module openalea.cnwgrass.gasexchange.parameters) delta_internode_distance_to_emerge (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute)

delta_internode_L (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) delta_L_emergence (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) delta_leaf_L (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) delta_leaf_pseudostem_length (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) delta_t (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.growth.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.model.Xylem attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) (openalea.cnwgrass.morphogenesis.simulation.Simulation attribute) (openalea.cnwgrass.senescence.simulation.Simulation attribute) delta_teq (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) delta_TT_GA (openalea.cnwgrass.morphogenesis.parameters.Parameters property)

E

EcophysiologicalConstants (class in openalea.cnwgrass.cnmetabolism.model) Element (class in openalea.cnwgrass.cnmetabolism.postprocessing) (class in openalea.cnwgrass.hydraulics.postprocessing) ELEMENT_TOPOLOGY_COLUMNS (in module openalea.cnwgrass.gasexchange.converter) ElementDefaultProperties (class in openalea.cnwgrass.gasexchange.parameters) ElementInit (class in openalea.cnwgrass.morphogenesis.parameters) ELEMENTS_FLUXES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) ELEMENTS_forcing (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) ELEMENTS_FORCING (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) elements_forcing_delta_t_ratio (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) ELEMENTS_INDEXES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) elements_inputs (openalea.cnwgrass.gasexchange.simulation.Simulation attribute) ELEMENTS_INTEGRATIVE_VARIABLES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) ELEMENTS_INTERMEDIATE_VARIABLES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) elements_outputs (openalea.cnwgrass.gasexchange.simulation.Simulation attribute) ELEMENTS_PHOTOSYNTHESIS_forcing (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) ELEMENTS_POSTPROCESSING_VARIABLES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) ELEMENTS_RUN_POSTPROCESSING_VARIABLES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) ELEMENTS_RUN_VARIABLES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute)

ELEMENTS_SENESCENCE_forcing (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) ELEMENTS_STATE (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) ELEMENTS_STATE_PARAMETERS (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) ELEMENTS_T_INDEXES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) ELEMENTS_TOPOLOGY_COLUMNS (in module openalea.cnwgrass.senescence.converter) ELEMENTS_VARIABLES (in module openalea.cnwgrass.cnmetabolism.converter) (in module openalea.cnwgrass.hydraulics.converter) enclosed_element (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrgan attribute) Endosperm (class in openalea.cnwgrass.cnmetabolism.model) (class in openalea.cnwgrass.cnmetabolism.postprocessing) endosperm (openalea.cnwgrass.cnmetabolism.model.Axis attribute) epsilon (openalea.cnwgrass.hydraulics.parameters.HiddenZoneParameters attribute) (openalea.cnwgrass.hydraulics.parameters.InternodeElementParameters attribute) (openalea.cnwgrass.hydraulics.parameters.LaminaElementParameters attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementParameters attribute) (openalea.cnwgrass.hydraulics.parameters.SheathElementParameters attribute) Export_Amino_Acids (openalea.cnwgrass.cnmetabolism.model.Roots attribute) Export_cytokinins (openalea.cnwgrass.cnmetabolism.model.Roots attribute) Export_Nitrates (openalea.cnwgrass.cnmetabolism.model.Roots attribute) exposed_element (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrgan attribute) extensibility (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) external_soil_model (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute)

F

F_NIT_RED_SH_CS (openalea.cnwgrass.respiration.model.RespirationModel attribute) FITTED_L0 (openalea.cnwgrass.growth.parameters.Parameters attribute) FITTED_L0_IN (openalea.cnwgrass.growth.parameters.Parameters attribute) from_dataframe() (in module openalea.cnwgrass.gasexchange.converter) from_dataframes() (in module openalea.cnwgrass.cnmetabolism.converter) (in module openalea.cnwgrass.growth.converter) (in module openalea.cnwgrass.hydraulics.converter) (in module openalea.cnwgrass.morphogenesis.converter) (in module openalea.cnwgrass.senescence.converter)

fructan (openalea.cnwgrass.cnmetabolism.model.HiddenZone attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.growth.parameters.OrganInit attribute) (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementInitCompartments attribute) (openalea.cnwgrass.morphogenesis.parameters.ElementInit attribute) (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute)

G

GAMMA (openalea.cnwgrass.hydraulics.parameters.HiddenZoneParameters attribute) (openalea.cnwgrass.morphogenesis.parameters.ParametersHydraulics attribute) GASEXCHANGE_ELEMENTS_INPUTS (in module openalea.cnwgrass.integration.gasexchange_facade) GASEXCHANGE_ORGANS_NAMES (in module openalea.cnwgrass.integration.gasexchange_facade) GasExchangeFacade (class in openalea.cnwgrass.integration.gasexchange_facade) generate_graphs() (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) geometrical_model (openalea.cnwgrass.integration.morphogenesis_facade.MorphogenesisFacade attribute) get_management_value() (in module openalea.cnwgrass.integration.runner) Grains (class in openalea.cnwgrass.cnmetabolism.model) (class in openalea.cnwgrass.cnmetabolism.postprocessing) grains (openalea.cnwgrass.cnmetabolism.model.Axis attribute) graphs() (openalea.cnwgrass.integration.cnmetabolism_facade.CNMetabolismFacade static method) (openalea.cnwgrass.integration.hydraulics_facade.hydraulicsFacade static method)

green_area (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.growth.parameters.OrganInit attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrgan attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.PhytomerInitCompartments attribute) (openalea.cnwgrass.morphogenesis.parameters.ElementInit attribute) Growth (openalea.cnwgrass.hydraulics.model.Axis attribute) (openalea.cnwgrass.hydraulics.model.Phytomer attribute) GrowthFacade (class in openalea.cnwgrass.integration.growth_facade) GrowthModel (class in openalea.cnwgrass.growth.model) GrowthModelHydraulics (class in openalea.cnwgrass.growth.model)

H

HATS_LATS (openalea.cnwgrass.cnmetabolism.model.Roots attribute) HEXOSE_MOLAR_MASS_C_RATIO (in module openalea.cnwgrass.growth.parameters) (openalea.cnwgrass.cnmetabolism.model.EcophysiologicalConstants attribute) HIDDEN_ZONE_INIT_COMPARTMENTS (in module openalea.cnwgrass.hydraulics.parameters) HIDDEN_ZONE_PARAMETERS (in module openalea.cnwgrass.hydraulics.parameters) HiddenZone (class in openalea.cnwgrass.cnmetabolism.model) (class in openalea.cnwgrass.cnmetabolism.postprocessing) (class in openalea.cnwgrass.hydraulics.model) (class in openalea.cnwgrass.hydraulics.postprocessing) hiddenzone (openalea.cnwgrass.cnmetabolism.model.Phytomer attribute) (openalea.cnwgrass.hydraulics.model.Phytomer attribute) hiddenzone_age (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) HIDDENZONE_FLUXES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) hiddenzone_forcing_delta_t_ratio (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) HIDDENZONE_INDEXES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) HIDDENZONE_INTEGRATIVE_VARIABLES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) HIDDENZONE_INTERMEDIATE_VARIABLES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) hiddenzone_outputs (openalea.cnwgrass.growth.model.GrowthModel attribute) HIDDENZONE_POSTPROCESSING_VARIABLES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing)

HIDDENZONE_RUN_POSTPROCESSING_VARIABLES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) HIDDENZONE_RUN_VARIABLES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) HIDDENZONE_STATE (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) HIDDENZONE_STATE_PARAMETERS (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) HIDDENZONE_T_INDEXES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) HIDDENZONE_TOPOLOGY_COLUMNS (in module openalea.cnwgrass.growth.converter) (in module openalea.cnwgrass.morphogenesis.converter) HIDDENZONE_VARIABLES (in module openalea.cnwgrass.cnmetabolism.converter) (in module openalea.cnwgrass.hydraulics.converter) HiddenZoneInit (class in openalea.cnwgrass.morphogenesis.parameters) HiddenZoneInitCompartments (class in openalea.cnwgrass.hydraulics.parameters) HiddenZoneInitHydraulics (class in openalea.cnwgrass.morphogenesis.parameters) HiddenZoneParameters (class in openalea.cnwgrass.hydraulics.parameters) HOUR_TO_SECOND_CONVERSION_FACTOR (in module openalea.cnwgrass.hydraulics.parameters) hydraulics (openalea.cnwgrass.growth.simulation.Simulation attribute) (openalea.cnwgrass.morphogenesis.simulation.Simulation attribute) hydraulics_ATTRIBUTES_MAPPING (in module openalea.cnwgrass.integration.hydraulics_facade) hydraulics_CLASSES_TO_DATAFRAME_ORGANS_MAPPING (in module openalea.cnwgrass.hydraulics.converter) hydraulics_ORGANS_TO_ELEMENTS_MAPPING (in module openalea.cnwgrass.integration.hydraulics_facade) hydraulicsFacade (class in openalea.cnwgrass.integration.hydraulics_facade)

I

index (openalea.cnwgrass.cnmetabolism.model.HiddenZone attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.cnmetabolism.model.Phytomer attribute) (openalea.cnwgrass.cnmetabolism.model.Plant attribute) (openalea.cnwgrass.hydraulics.model.Phytomer attribute) INIT_COMPARTMENTS (openalea.cnwgrass.cnmetabolism.model.Axis attribute) (openalea.cnwgrass.cnmetabolism.model.Grains attribute) (openalea.cnwgrass.cnmetabolism.model.HiddenZone attribute) (openalea.cnwgrass.cnmetabolism.model.Phloem attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.cnmetabolism.model.Roots attribute) (openalea.cnwgrass.hydraulics.model.Axis attribute) (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.model.InternodeElement attribute) (openalea.cnwgrass.hydraulics.model.LaminaElement attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.model.Phytomer attribute) (openalea.cnwgrass.hydraulics.model.Roots attribute) (openalea.cnwgrass.hydraulics.model.SheathElement attribute) (openalea.cnwgrass.hydraulics.model.Xylem attribute) INIT_CYTOKININS_EMERGED_TISSUE (openalea.cnwgrass.growth.parameters.Parameters attribute) init_leaf_L (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInitHydraulics attribute) initial_conditions (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) initial_conditions_mapping (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) initial_volume (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) initialize() (openalea.cnwgrass.cnmetabolism.model.Grains method) (openalea.cnwgrass.cnmetabolism.model.Organ method) (openalea.cnwgrass.cnmetabolism.simulation.Simulation method) (openalea.cnwgrass.gasexchange.simulation.Simulation method) (openalea.cnwgrass.growth.simulation.Simulation method) (openalea.cnwgrass.hydraulics.model.Organ method) (openalea.cnwgrass.hydraulics.simulation.Simulation method) (openalea.cnwgrass.morphogenesis.simulation.Simulation method) (openalea.cnwgrass.senescence.simulation.Simulation method)

inputs (openalea.cnwgrass.gasexchange.simulation.Simulation attribute) (openalea.cnwgrass.growth.simulation.Simulation attribute) (openalea.cnwgrass.morphogenesis.simulation.Simulation attribute) (openalea.cnwgrass.senescence.simulation.Simulation attribute) Internode (class in openalea.cnwgrass.cnmetabolism.model) (class in openalea.cnwgrass.hydraulics.model) internode (openalea.cnwgrass.cnmetabolism.model.Phytomer attribute) (openalea.cnwgrass.hydraulics.model.Phytomer attribute) internode_distance_to_emerge (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) INTERNODE_ELEMENT_INIT_COMPARTMENTS (in module openalea.cnwgrass.hydraulics.parameters) INTERNODE_ELEMENT_PARAMETERS (in module openalea.cnwgrass.hydraulics.parameters) internode_enclosed_mstruct (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) internode_enclosed_Nstruct (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) internode_L (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) internode_L_init (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) internode_Lmax (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) internode_Lmax_lig (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) internode_LSIW_dict (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) InternodeElement (class in openalea.cnwgrass.cnmetabolism.model) (class in openalea.cnwgrass.hydraulics.model) InternodeElementInitCompartments (class in openalea.cnwgrass.hydraulics.parameters) InternodeElementParameters (class in openalea.cnwgrass.hydraulics.parameters) interpolate_forcing (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) interpolation_functions (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) is_growing (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementInitCompartments attribute)

K

K_ROOTS_GROWTH (openalea.cnwgrass.growth.parameters.ParametersHydraulics attribute) K_ROOTS_GROWTH_POSTFLO (openalea.cnwgrass.growth.parameters.Parameters attribute) K_ROOTS_GROWTH_PREFLO (openalea.cnwgrass.growth.parameters.Parameters attribute)

KELVIN_DEGREE (in module openalea.cnwgrass.gasexchange.parameters) KM (openalea.cnwgrass.respiration.model.RespirationModel attribute) KM_MAX (openalea.cnwgrass.respiration.model.RespirationModel attribute)

L

label (openalea.cnwgrass.cnmetabolism.model.Axis attribute) (openalea.cnwgrass.cnmetabolism.model.Organ attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) Lamina (class in openalea.cnwgrass.cnmetabolism.model) (class in openalea.cnwgrass.hydraulics.model) lamina (openalea.cnwgrass.cnmetabolism.model.Phytomer attribute) (openalea.cnwgrass.hydraulics.model.Phytomer attribute) LAMINA_ELEMENT_INIT_COMPARTMENTS (in module openalea.cnwgrass.hydraulics.parameters) LAMINA_ELEMENT_PARAMETERS (in module openalea.cnwgrass.hydraulics.parameters) lamina_Lmax (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) lamina_Lmax_dict (openalea.cnwgrass.morphogenesis.parameters.ParametersHydraulics attribute) LaminaElement (class in openalea.cnwgrass.cnmetabolism.model) (class in openalea.cnwgrass.hydraulics.model) LaminaElementInitCompartments (class in openalea.cnwgrass.hydraulics.parameters) LaminaElementParameters (class in openalea.cnwgrass.hydraulics.parameters) leaf_enclosed_mstruct (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) leaf_enclosed_Nstruct (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) leaf_is_growing (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) leaf_L (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) leaf_Lmax (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) leaf_Lmax_em (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute)

leaf_Lmax_MAX (openalea.cnwgrass.hydraulics.parameters.HiddenZoneParameters attribute) (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) leaf_pseudo_age (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInitHydraulics attribute) leaf_pseudo_age_Kc (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) leaf_pseudo_age_Kn (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) leaf_pseudo_age_Vmax (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) leaf_pseudostem_length (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) leaf_W_L_MIN (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) leaf_Wmax (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) leaf_Wmax_dict (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) leaf_Wmax_Marion (openalea.cnwgrass.hydraulics.parameters.HiddenZoneParameters attribute) (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) length (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementInitCompartments attribute) (openalea.cnwgrass.morphogenesis.parameters.ElementInit attribute) length_hz_En (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) ligule_topology_columns (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel attribute) Loading_Amino_Acids (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) Loading_Sucrose (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) LOGGERS_NAMES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) LSIW (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) LSSW (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute)

M

max_mstruct (openalea.cnwgrass.morphogenesis.parameters.ElementInit attribute) max_nb_leaves (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) max_proteins (openalea.cnwgrass.morphogenesis.parameters.ElementInit attribute) mean_conc_sucrose (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) MIN_GREEN_AREA (in module openalea.cnwgrass.senescence.parameters) MINERAL_LIVING_TISSUE (in module openalea.cnwgrass.growth.parameters) MINERAL_SENESCED_TISSUE (in module openalea.cnwgrass.growth.parameters) mineralisation (openalea.cnwgrass.cnmetabolism.model.Soil attribute) MODEL_COMPARTMENTS_NAMES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) modified_Arrhenius_equation() (openalea.cnwgrass.cnmetabolism.model.Endosperm static method) (openalea.cnwgrass.cnmetabolism.model.Grains static method) (openalea.cnwgrass.morphogenesis.model.MorphogenesisModel method) module openalea.cnwgrass.cnmetabolism openalea.cnwgrass.cnmetabolism.converter openalea.cnwgrass.cnmetabolism.model openalea.cnwgrass.cnmetabolism.postprocessing openalea.cnwgrass.cnmetabolism.simulation openalea.cnwgrass.cnmetabolism.tools openalea.cnwgrass.gasexchange openalea.cnwgrass.gasexchange.converter openalea.cnwgrass.gasexchange.model openalea.cnwgrass.gasexchange.parameters openalea.cnwgrass.gasexchange.simulation openalea.cnwgrass.growth openalea.cnwgrass.growth.converter openalea.cnwgrass.growth.model openalea.cnwgrass.growth.parameters openalea.cnwgrass.growth.simulation openalea.cnwgrass.hydraulics openalea.cnwgrass.hydraulics.converter openalea.cnwgrass.hydraulics.model openalea.cnwgrass.hydraulics.parameters openalea.cnwgrass.hydraulics.postprocessing openalea.cnwgrass.hydraulics.simulation openalea.cnwgrass.hydraulics.tools openalea.cnwgrass.integration openalea.cnwgrass.integration.build_outputs openalea.cnwgrass.integration.caribu_facade openalea.cnwgrass.integration.cnmetabolism_facade openalea.cnwgrass.integration.gasexchange_facade openalea.cnwgrass.integration.growth_facade openalea.cnwgrass.integration.hydraulics_facade openalea.cnwgrass.integration.morphogenesis_facade openalea.cnwgrass.integration.runner openalea.cnwgrass.integration.senescence_facade openalea.cnwgrass.integration.tools openalea.cnwgrass.morphogenesis openalea.cnwgrass.morphogenesis.converter openalea.cnwgrass.morphogenesis.model openalea.cnwgrass.morphogenesis.parameters openalea.cnwgrass.morphogenesis.simulation openalea.cnwgrass.respiration openalea.cnwgrass.respiration.model openalea.cnwgrass.senescence openalea.cnwgrass.senescence.converter openalea.cnwgrass.senescence.model openalea.cnwgrass.senescence.parameters openalea.cnwgrass.senescence.simulation

MorphogenesisFacade (class in openalea.cnwgrass.integration.morphogenesis_facade) MorphogenesisModel (class in openalea.cnwgrass.morphogenesis.model) MorphogenesisModelHydraulics (class in openalea.cnwgrass.morphogenesis.model) mstruct (openalea.cnwgrass.cnmetabolism.model.Axis attribute) (openalea.cnwgrass.cnmetabolism.model.Endosperm attribute) (openalea.cnwgrass.cnmetabolism.model.HiddenZone attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrgan attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.cnmetabolism.model.Phytomer attribute) (openalea.cnwgrass.cnmetabolism.model.Roots attribute) (openalea.cnwgrass.growth.parameters.OrganInit attribute) (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementInitCompartments attribute) (openalea.cnwgrass.morphogenesis.parameters.ElementInit attribute) (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) MTG_RUN_VARIABLES (in module openalea.cnwgrass.integration.cnmetabolism_facade) (in module openalea.cnwgrass.integration.hydraulics_facade) MTG_TO_CNMETABOLISM_AXES_ORGANS_MAPPING (in module openalea.cnwgrass.integration.cnmetabolism_facade) MTG_TO_CNMETABOLISM_PHYTOMERS_ORGANS_MAPPING (in module openalea.cnwgrass.integration.cnmetabolism_facade) MTG_TO_hydraulics_AXES_ORGANS_MAPPING (in module openalea.cnwgrass.integration.hydraulics_facade) MTG_TO_hydraulics_PHYTOMERS_ORGANS_MAPPING (in module openalea.cnwgrass.integration.hydraulics_facade)

N

n (openalea.cnwgrass.growth.parameters.ParametersHydraulics attribute) (openalea.cnwgrass.morphogenesis.parameters.ParametersHydraulics attribute) N_exudation (openalea.cnwgrass.cnmetabolism.model.Roots attribute) N_MOLAR_MASS (in module openalea.cnwgrass.growth.parameters) (in module openalea.cnwgrass.senescence.parameters) (openalea.cnwgrass.cnmetabolism.model.EcophysiologicalConstants attribute) NB_C_HEXOSES (openalea.cnwgrass.cnmetabolism.model.EcophysiologicalConstants attribute) NB_C_SUCROSE (in module openalea.cnwgrass.hydraulics.parameters) (openalea.cnwgrass.cnmetabolism.model.EcophysiologicalConstants attribute) NB_C_TRIOSEP (openalea.cnwgrass.cnmetabolism.model.EcophysiologicalConstants attribute) nb_PLASTO_internode_init (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) nb_replications (openalea.cnwgrass.cnmetabolism.model.HiddenZone property) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement property) (openalea.cnwgrass.cnmetabolism.model.Phytomer property) (openalea.cnwgrass.hydraulics.model.HiddenZone property) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement property) (openalea.cnwgrass.hydraulics.model.Phytomer property) new_forcing_values (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute)

nfev_total (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) nitrates (openalea.cnwgrass.cnmetabolism.model.Axis attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrgan attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.cnmetabolism.model.Phytomer attribute) (openalea.cnwgrass.cnmetabolism.model.Roots attribute) (openalea.cnwgrass.growth.parameters.OrganInit attribute) (openalea.cnwgrass.morphogenesis.parameters.ElementInit attribute) Nitrates_import (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) NITRATES_MOLAR_MASS_N_RATIO (openalea.cnwgrass.cnmetabolism.model.EcophysiologicalConstants attribute) Nresidual (openalea.cnwgrass.growth.parameters.OrganInit attribute) (openalea.cnwgrass.morphogenesis.parameters.ElementInit attribute) NSC_Retroinhibition (in module openalea.cnwgrass.gasexchange.parameters) Nstruct (openalea.cnwgrass.cnmetabolism.model.HiddenZone attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.cnmetabolism.model.Roots attribute) (openalea.cnwgrass.growth.parameters.OrganInit attribute) (openalea.cnwgrass.morphogenesis.parameters.ElementInit attribute) (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute)

O

OFFSET_LEAF (openalea.cnwgrass.hydraulics.parameters.HiddenZoneParameters attribute) OFFSET_MASS_VOLUME (in module openalea.cnwgrass.hydraulics.parameters) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneParameters attribute) openalea.cnwgrass.cnmetabolism module openalea.cnwgrass.cnmetabolism.converter module openalea.cnwgrass.cnmetabolism.model module openalea.cnwgrass.cnmetabolism.postprocessing module openalea.cnwgrass.cnmetabolism.simulation module openalea.cnwgrass.cnmetabolism.tools module openalea.cnwgrass.gasexchange module openalea.cnwgrass.gasexchange.converter module openalea.cnwgrass.gasexchange.model module openalea.cnwgrass.gasexchange.parameters module openalea.cnwgrass.gasexchange.simulation module openalea.cnwgrass.growth module openalea.cnwgrass.growth.converter module openalea.cnwgrass.growth.model module openalea.cnwgrass.growth.parameters module openalea.cnwgrass.growth.simulation module openalea.cnwgrass.hydraulics module openalea.cnwgrass.hydraulics.converter module openalea.cnwgrass.hydraulics.model module openalea.cnwgrass.hydraulics.parameters module openalea.cnwgrass.hydraulics.postprocessing module openalea.cnwgrass.hydraulics.simulation module openalea.cnwgrass.hydraulics.tools module openalea.cnwgrass.integration module openalea.cnwgrass.integration.build_outputs module openalea.cnwgrass.integration.caribu_facade module openalea.cnwgrass.integration.cnmetabolism_facade module openalea.cnwgrass.integration.gasexchange_facade module openalea.cnwgrass.integration.growth_facade module openalea.cnwgrass.integration.hydraulics_facade module openalea.cnwgrass.integration.morphogenesis_facade module openalea.cnwgrass.integration.runner module openalea.cnwgrass.integration.senescence_facade module openalea.cnwgrass.integration.tools module

openalea.cnwgrass.morphogenesis module openalea.cnwgrass.morphogenesis.converter module openalea.cnwgrass.morphogenesis.model module openalea.cnwgrass.morphogenesis.parameters module openalea.cnwgrass.morphogenesis.simulation module openalea.cnwgrass.respiration module openalea.cnwgrass.respiration.model module openalea.cnwgrass.senescence module openalea.cnwgrass.senescence.converter module openalea.cnwgrass.senescence.model module openalea.cnwgrass.senescence.parameters module openalea.cnwgrass.senescence.simulation module optimal_growth_option (openalea.cnwgrass.morphogenesis.simulation.Simulation attribute) Organ (class in openalea.cnwgrass.cnmetabolism.model) (class in openalea.cnwgrass.hydraulics.model) (class in openalea.cnwgrass.hydraulics.postprocessing) ORGAN_PARAMETERS (in module openalea.cnwgrass.hydraulics.parameters) organ_temperature() (in module openalea.cnwgrass.gasexchange.model) OrganInit (class in openalea.cnwgrass.growth.parameters) OrganParameters (class in openalea.cnwgrass.hydraulics.parameters) ORGANS_FLUXES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) ORGANS_INDEXES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) ORGANS_INTEGRATIVE_VARIABLES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) ORGANS_INTERMEDIATE_VARIABLES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) ORGANS_POSTPROCESSING_VARIABLES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) ORGANS_RUN_POSTPROCESSING_VARIABLES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) ORGANS_RUN_VARIABLES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) ORGANS_STATE (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) ORGANS_STATE_PARAMETERS (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) ORGANS_T_INDEXES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) ORGANS_VARIABLES (in module openalea.cnwgrass.cnmetabolism.converter) (in module openalea.cnwgrass.hydraulics.converter) osmotic_water_potential (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementInitCompartments attribute) outputs (openalea.cnwgrass.gasexchange.simulation.Simulation attribute) (openalea.cnwgrass.growth.simulation.Simulation attribute) (openalea.cnwgrass.morphogenesis.simulation.Simulation attribute) (openalea.cnwgrass.senescence.simulation.Simulation attribute) OUTPUTS_INDEXES (in module openalea.cnwgrass.cnmetabolism.tools) (in module openalea.cnwgrass.hydraulics.tools) (in module openalea.cnwgrass.integration.tools)

P

PARa_prim (openalea.cnwgrass.gasexchange.parameters.ElementDefaultProperties attribute) Parameters (class in openalea.cnwgrass.growth.parameters) (class in openalea.cnwgrass.morphogenesis.parameters) PARAMETERS (openalea.cnwgrass.cnmetabolism.model.Axis attribute) (openalea.cnwgrass.cnmetabolism.model.Chaff attribute) (openalea.cnwgrass.cnmetabolism.model.ChaffElement attribute) (openalea.cnwgrass.cnmetabolism.model.Endosperm attribute) (openalea.cnwgrass.cnmetabolism.model.Grains attribute) (openalea.cnwgrass.cnmetabolism.model.HiddenZone attribute) (openalea.cnwgrass.cnmetabolism.model.Internode attribute) (openalea.cnwgrass.cnmetabolism.model.InternodeElement attribute) (openalea.cnwgrass.cnmetabolism.model.Lamina attribute) (openalea.cnwgrass.cnmetabolism.model.LaminaElement attribute) (openalea.cnwgrass.cnmetabolism.model.Peduncle attribute) (openalea.cnwgrass.cnmetabolism.model.PeduncleElement attribute) (openalea.cnwgrass.cnmetabolism.model.Phloem attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrgan attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.cnmetabolism.model.Phytomer attribute) (openalea.cnwgrass.cnmetabolism.model.Plant attribute) (openalea.cnwgrass.cnmetabolism.model.Population attribute) (openalea.cnwgrass.cnmetabolism.model.Roots attribute) (openalea.cnwgrass.cnmetabolism.model.Sheath attribute) (openalea.cnwgrass.cnmetabolism.model.SheathElement attribute) (openalea.cnwgrass.cnmetabolism.model.Soil attribute) (openalea.cnwgrass.hydraulics.model.Axis attribute) (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.model.InternodeElement attribute) (openalea.cnwgrass.hydraulics.model.LaminaElement attribute) (openalea.cnwgrass.hydraulics.model.Organ attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.model.Phytomer attribute) (openalea.cnwgrass.hydraulics.model.Plant attribute) (openalea.cnwgrass.hydraulics.model.Population attribute) (openalea.cnwgrass.hydraulics.model.Roots attribute) (openalea.cnwgrass.hydraulics.model.SheathElement attribute) (openalea.cnwgrass.hydraulics.model.Soil attribute) (openalea.cnwgrass.hydraulics.model.Xylem attribute) parameters_factory() (in module openalea.cnwgrass.growth.parameters) (in module openalea.cnwgrass.morphogenesis.parameters) ParametersHydraulics (class in openalea.cnwgrass.growth.parameters) (class in openalea.cnwgrass.morphogenesis.parameters) Peduncle (class in openalea.cnwgrass.cnmetabolism.model) peduncle (openalea.cnwgrass.cnmetabolism.model.Phytomer attribute) PeduncleElement (class in openalea.cnwgrass.cnmetabolism.model) phi_initial (openalea.cnwgrass.hydraulics.parameters.HiddenZoneParameters attribute) Phloem (class in openalea.cnwgrass.cnmetabolism.model) (class in openalea.cnwgrass.cnmetabolism.postprocessing) phloem (openalea.cnwgrass.cnmetabolism.model.Axis attribute) Photosynthesis (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) photosynthesis_forcing_delta_t_ratio (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) PHOTOSYNTHETIC_ORGAN_ELEMENT_INIT_COMPARTMENTS (in module openalea.cnwgrass.hydraulics.parameters) PHOTOSYNTHETIC_ORGAN_ELEMENT_PARAMETERS (in module openalea.cnwgrass.hydraulics.parameters) PHOTOSYNTHETIC_ORGANS_NAMES (in module openalea.cnwgrass.integration.senescence_facade) PhotosyntheticOrgan (class in openalea.cnwgrass.cnmetabolism.model) (class in openalea.cnwgrass.hydraulics.model) PhotosyntheticOrganElement (class in openalea.cnwgrass.cnmetabolism.model) (class in openalea.cnwgrass.hydraulics.model) PhotosyntheticOrganElementInitCompartments (class in openalea.cnwgrass.hydraulics.parameters) PhotosyntheticOrganElementParameters (class in openalea.cnwgrass.hydraulics.parameters) Phytomer (class in openalea.cnwgrass.cnmetabolism.model) (class in openalea.cnwgrass.hydraulics.model) PHYTOMER_INIT_COMPARTMENTS (in module openalea.cnwgrass.hydraulics.parameters) PHYTOMER_PARAMETERS (in module openalea.cnwgrass.hydraulics.parameters) PhytomerInitCompartments (class in openalea.cnwgrass.hydraulics.parameters) PhytomerParameters (class in openalea.cnwgrass.hydraulics.parameters) phytomers (openalea.cnwgrass.cnmetabolism.model.Axis attribute) (openalea.cnwgrass.hydraulics.model.Axis attribute) PHYTOMERS_FLUXES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) PHYTOMERS_INDEXES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) PHYTOMERS_INTEGRATIVE_VARIABLES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) PHYTOMERS_INTERMEDIATE_VARIABLES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) PHYTOMERS_POSTPROCESSING_VARIABLES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing)

PHYTOMERS_RUN_POSTPROCESSING_VARIABLES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) PHYTOMERS_RUN_VARIABLES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) PHYTOMERS_STATE (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) PHYTOMERS_STATE_PARAMETERS (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) PHYTOMERS_T_INDEXES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) PHYTOMERS_VARIABLES (in module openalea.cnwgrass.cnmetabolism.converter) (in module openalea.cnwgrass.hydraulics.converter) PI (in module openalea.cnwgrass.hydraulics.parameters) Plant (class in openalea.cnwgrass.cnmetabolism.model) (class in openalea.cnwgrass.hydraulics.model) PLANT_PARAMETERS (in module openalea.cnwgrass.hydraulics.parameters) plant_water_content (openalea.cnwgrass.hydraulics.model.Axis attribute) PlantParameters (class in openalea.cnwgrass.hydraulics.parameters) plants (openalea.cnwgrass.cnmetabolism.model.Population attribute) PLANTS_FLUXES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) PLANTS_INDEXES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) PLANTS_INTEGRATIVE_VARIABLES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) PLANTS_INTERMEDIATE_VARIABLES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) PLANTS_POSTPROCESSING_VARIABLES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) PLANTS_RUN_POSTPROCESSING_VARIABLES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) PLANTS_RUN_VARIABLES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) PLANTS_STATE (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) PLANTS_STATE_PARAMETERS (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) PLANTS_T_INDEXES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) PLANTS_VARIABLES (in module openalea.cnwgrass.cnmetabolism.converter) (in module openalea.cnwgrass.hydraulics.converter) plot_outputs() (in module openalea.cnwgrass.integration.tools) Population (class in openalea.cnwgrass.cnmetabolism.model) (class in openalea.cnwgrass.hydraulics.model) population (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) POPULATION_PARAMETERS (in module openalea.cnwgrass.hydraulics.parameters) POPULATION_RUN_VARIABLES (in module openalea.cnwgrass.integration.cnmetabolism_facade) (in module openalea.cnwgrass.integration.hydraulics_facade) POPULATION_STATE_VARIABLE (in module openalea.cnwgrass.integration.cnmetabolism_facade) (in module openalea.cnwgrass.integration.hydraulics_facade) PopulationParameters (class in openalea.cnwgrass.hydraulics.parameters) postprocessing() (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) (openalea.cnwgrass.integration.cnmetabolism_facade.CNMetabolismFacade static method) (openalea.cnwgrass.integration.hydraulics_facade.hydraulicsFacade static method) previous_forcing_values (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) prim_scale (in module openalea.cnwgrass.gasexchange.parameters) proteins (openalea.cnwgrass.cnmetabolism.model.Endosperm attribute) (openalea.cnwgrass.cnmetabolism.model.Grains attribute) (openalea.cnwgrass.cnmetabolism.model.HiddenZone attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.growth.parameters.OrganInit attribute) (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementInitCompartments attribute) (openalea.cnwgrass.morphogenesis.parameters.ElementInit attribute) (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) PROTEINS_MOLAR_MASS_C_RATIO (openalea.cnwgrass.cnmetabolism.model.EcophysiologicalConstants attribute) PROTEINS_MOLAR_MASS_N_RATIO (in module openalea.cnwgrass.growth.parameters) (openalea.cnwgrass.cnmetabolism.model.EcophysiologicalConstants attribute) psi_ref (openalea.cnwgrass.morphogenesis.parameters.ParametersHydraulics attribute) Psurf_to_SLNnonstruct (in module openalea.cnwgrass.gasexchange.parameters)

R

R (in module openalea.cnwgrass.hydraulics.parameters) R_endosperm() (openalea.cnwgrass.respiration.model.RespirationModel class method) R_grain_growth() (openalea.cnwgrass.respiration.model.RespirationModel class method) R_grain_growth_starch (openalea.cnwgrass.cnmetabolism.model.Grains attribute) R_grain_growth_struct (openalea.cnwgrass.cnmetabolism.model.Grains attribute) R_growth() (openalea.cnwgrass.respiration.model.RespirationModel class method) R_min_upt() (openalea.cnwgrass.respiration.model.RespirationModel class method) R_N2fix() (openalea.cnwgrass.respiration.model.RespirationModel class method) R_Namm_upt() (openalea.cnwgrass.respiration.model.RespirationModel class method) R_Nnit_red (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.cnmetabolism.model.Roots attribute) R_Nnit_red() (openalea.cnwgrass.respiration.model.RespirationModel class method) R_Nnit_upt (openalea.cnwgrass.cnmetabolism.model.Roots attribute) R_Nnit_upt() (openalea.cnwgrass.respiration.model.RespirationModel class method) R_phloem() (openalea.cnwgrass.respiration.model.RespirationModel class method) R_phloem_loading (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) R_residual (openalea.cnwgrass.cnmetabolism.model.Endosperm attribute) (openalea.cnwgrass.cnmetabolism.model.HiddenZone attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.cnmetabolism.model.Roots attribute) R_residual() (openalea.cnwgrass.respiration.model.RespirationModel class method) R_soil (openalea.cnwgrass.hydraulics.parameters.XylemParameters attribute) R_xylem_hz (openalea.cnwgrass.hydraulics.parameters.XylemParameters attribute) R_xylem_organ (openalea.cnwgrass.hydraulics.parameters.XylemParameters attribute) RATIO_AMINO_ACIDS_MSTRUCT (openalea.cnwgrass.growth.parameters.Parameters attribute) RATIO_C_mstruct (openalea.cnwgrass.cnmetabolism.model.EcophysiologicalConstants attribute) RATIO_C_MSTRUCT_ROOTS (in module openalea.cnwgrass.growth.parameters) ratio_DZ_l_end (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) ratio_DZ_l_init (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) ratio_DZ_l_mid (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) RATIO_ENCLOSED_LEAF_INTERNODE (openalea.cnwgrass.growth.parameters.Parameters attribute) ratio_LSIW_LSSW (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) RATIO_MSTRUCT_DM (in module openalea.cnwgrass.hydraulics.parameters) (openalea.cnwgrass.growth.parameters.Parameters attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneParameters attribute) RATIO_N_MSTRUCT_ROOTS (in module openalea.cnwgrass.growth.parameters)

RATIO_SUCROSE_MSTRUCT (openalea.cnwgrass.growth.parameters.Parameters attribute) Regul_S_Fructan (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) regul_transpiration (openalea.cnwgrass.cnmetabolism.model.Roots attribute) RER_Kc (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) RER_Kn (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) RERmax_dict_IN (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) resistance (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) respiration_model (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) RespirationModel (class in openalea.cnwgrass.respiration.model) RHO_WATER (in module openalea.cnwgrass.hydraulics.parameters) Roots (class in openalea.cnwgrass.cnmetabolism.model) (class in openalea.cnwgrass.cnmetabolism.postprocessing) (class in openalea.cnwgrass.hydraulics.model) (class in openalea.cnwgrass.hydraulics.postprocessing) roots (openalea.cnwgrass.cnmetabolism.model.Axis attribute) ROOTS_forcing (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) ROOTS_INIT_COMPARTMENTS (in module openalea.cnwgrass.hydraulics.parameters) ROOTS_PARAMETERS (in module openalea.cnwgrass.hydraulics.parameters) ROOTS_TOPOLOGY_COLUMNS (in module openalea.cnwgrass.senescence.converter) RootsInitCompartments (class in openalea.cnwgrass.hydraulics.parameters) RootsParameters (class in openalea.cnwgrass.hydraulics.parameters) run() (in module openalea.cnwgrass.integration.runner) (openalea.cnwgrass.cnmetabolism.simulation.Simulation method) (openalea.cnwgrass.gasexchange.simulation.Simulation method) (openalea.cnwgrass.growth.simulation.Simulation method) (openalea.cnwgrass.hydraulics.simulation.Simulation method) (openalea.cnwgrass.integration.caribu_facade.CaribuFacade method) (openalea.cnwgrass.integration.cnmetabolism_facade.CNMetabolismFacade method) (openalea.cnwgrass.integration.gasexchange_facade.GasExchangeFacade method) (openalea.cnwgrass.integration.growth_facade.GrowthFacade method) (openalea.cnwgrass.integration.hydraulics_facade.hydraulicsFacade method) (openalea.cnwgrass.integration.morphogenesis_facade.MorphogenesisFacade method) (openalea.cnwgrass.integration.senescence_facade.SENESCENCEFacade method) (openalea.cnwgrass.morphogenesis.simulation.Simulation method) (openalea.cnwgrass.senescence.simulation.Simulation method)

S

S_Amino_Acids (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.cnmetabolism.model.Roots attribute) S_cytokinins (openalea.cnwgrass.cnmetabolism.model.Roots attribute) S_Fructan (openalea.cnwgrass.cnmetabolism.model.HiddenZone attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) S_grain_starch (openalea.cnwgrass.cnmetabolism.model.Grains attribute) S_grain_structure (openalea.cnwgrass.cnmetabolism.model.Grains attribute) S_Proteins (openalea.cnwgrass.cnmetabolism.model.Grains attribute) (openalea.cnwgrass.cnmetabolism.model.HiddenZone attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) S_Starch (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) S_Sucrose (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) Sa (openalea.cnwgrass.hydraulics.parameters.HiddenZoneParameters attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementParameters attribute) SAM_temperature (openalea.cnwgrass.hydraulics.parameters.AxisInitCompartments attribute) save_df_to_csv() (in module openalea.cnwgrass.integration.runner) Sb (openalea.cnwgrass.hydraulics.parameters.HiddenZoneParameters attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementParameters attribute) Sc (openalea.cnwgrass.hydraulics.parameters.HiddenZoneParameters attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementParameters attribute) Sd (openalea.cnwgrass.hydraulics.parameters.HiddenZoneParameters attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementParameters attribute) SECOND_TO_HOUR_RATE_CONVERSION (openalea.cnwgrass.respiration.model.RespirationModel attribute) senesced_length_element (openalea.cnwgrass.growth.parameters.OrganInit attribute) (openalea.cnwgrass.morphogenesis.parameters.ElementInit attribute) senesced_mstruct (openalea.cnwgrass.cnmetabolism.model.Axis attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrgan attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.cnmetabolism.model.Phytomer attribute) (openalea.cnwgrass.cnmetabolism.model.Roots attribute) (openalea.cnwgrass.growth.parameters.OrganInit attribute) (openalea.cnwgrass.morphogenesis.parameters.ElementInit attribute) SENESCENCE_AXES_INPUTS (in module openalea.cnwgrass.senescence.converter) SENESCENCE_AXES_INPUTS_OUTPUTS (in module openalea.cnwgrass.senescence.converter) SENESCENCE_AXES_OUTPUTS (in module openalea.cnwgrass.senescence.converter) SENESCENCE_ELEMENTS_INPUTS (in module openalea.cnwgrass.senescence.converter) SENESCENCE_ELEMENTS_INPUTS_OUTPUTS (in module openalea.cnwgrass.senescence.converter) SENESCENCE_ELEMENTS_OUTPUTS (in module openalea.cnwgrass.senescence.converter) senescence_forcing_delta_t_ratio (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) SENESCENCE_ROOTS_INPUTS (in module openalea.cnwgrass.senescence.converter) SENESCENCE_ROOTS_INPUTS_OUTPUTS (in module openalea.cnwgrass.senescence.converter) SENESCENCE_ROOTS_OUTPUTS (in module openalea.cnwgrass.senescence.converter) SENESCENCE_ROOTS_POSTFLOWERING (in module openalea.cnwgrass.senescence.parameters) SENESCENCEFacade (class in openalea.cnwgrass.integration.senescence_facade) SenescenceModel (class in openalea.cnwgrass.senescence.model) setup_logging() (in module openalea.cnwgrass.cnmetabolism.tools) (in module openalea.cnwgrass.hydraulics.tools) SHARED_AXES_INPUTS_OUTPUTS_INDEXES (in module openalea.cnwgrass.integration.senescence_facade) SHARED_ELEMENTS_INPUTS_OUTPUTS_INDEXES (in module openalea.cnwgrass.integration.caribu_facade) (in module openalea.cnwgrass.integration.gasexchange_facade) (in module openalea.cnwgrass.integration.senescence_facade) SHARED_ORGANS_INPUTS_OUTPUTS_INDEXES (in module openalea.cnwgrass.integration.senescence_facade) Sheath (class in openalea.cnwgrass.cnmetabolism.model) (class in openalea.cnwgrass.hydraulics.model) sheath (openalea.cnwgrass.cnmetabolism.model.Phytomer attribute) (openalea.cnwgrass.hydraulics.model.Phytomer attribute) SHEATH_ELEMENT_INIT_COMPARTMENTS (in module openalea.cnwgrass.hydraulics.parameters) SHEATH_ELEMENT_PARAMETERS (in module openalea.cnwgrass.hydraulics.parameters) sheath_Lmax (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) SheathElement (class in openalea.cnwgrass.cnmetabolism.model) (class in openalea.cnwgrass.hydraulics.model) SheathElementInitCompartments (class in openalea.cnwgrass.hydraulics.parameters) SheathElementParameters (class in openalea.cnwgrass.hydraulics.parameters) Simulation (class in openalea.cnwgrass.cnmetabolism.simulation) (class in openalea.cnwgrass.gasexchange.simulation) (class in openalea.cnwgrass.growth.simulation) (class in openalea.cnwgrass.hydraulics.simulation) (class in openalea.cnwgrass.morphogenesis.simulation) (class in openalea.cnwgrass.senescence.simulation) SimulationConstructionError, [1]

SimulationError, [1], [2], [3], [4] SimulationInitializationError, [1] SimulationInputsError SimulationRunError, [1], [2], [3] SLOPE_MASS_VOLUME (in module openalea.cnwgrass.hydraulics.parameters) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneParameters attribute) Soil (class in openalea.cnwgrass.cnmetabolism.model) (class in openalea.cnwgrass.hydraulics.model) Soil_a (openalea.cnwgrass.hydraulics.parameters.SoilParameters attribute) Soil_b (openalea.cnwgrass.hydraulics.parameters.SoilParameters attribute) SOIL_PARAMETERS (in module openalea.cnwgrass.hydraulics.parameters) soil_water_potential (openalea.cnwgrass.hydraulics.parameters.XylemInitCompartments attribute) SoilParameters (class in openalea.cnwgrass.hydraulics.parameters) soils (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) SOILS_FLUXES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) SOILS_INDEXES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) SOILS_INTEGRATIVE_VARIABLES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) SOILS_INTERMEDIATE_VARIABLES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) SOILS_POSTPROCESSING_VARIABLES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) SOILS_RUN_POSTPROCESSING_VARIABLES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) SOILS_RUN_VARIABLES (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) SOILS_STATE (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) SOILS_STATE_PARAMETERS (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) SOILS_T_INDEXES (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) SOILS_VARIABLES (in module openalea.cnwgrass.cnmetabolism.converter) (in module openalea.cnwgrass.hydraulics.converter) SRWC (openalea.cnwgrass.hydraulics.model.Soil attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.XylemInitCompartments attribute) SSLW (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) starch (openalea.cnwgrass.cnmetabolism.model.Endosperm attribute) (openalea.cnwgrass.cnmetabolism.model.Grains attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.morphogenesis.parameters.ElementInit attribute) stomatal_conductance_BWB() (in module openalea.cnwgrass.gasexchange.model) stomatal_conductance_hydraulics() (in module openalea.cnwgrass.gasexchange.model) stomatal_conductance_Leuning() (in module openalea.cnwgrass.gasexchange.model) stomatal_conductance_Tuzet() (in module openalea.cnwgrass.gasexchange.model) structural_dry_mass (openalea.cnwgrass.cnmetabolism.model.Grains attribute) structure (openalea.cnwgrass.cnmetabolism.model.Grains attribute) sucrose (openalea.cnwgrass.cnmetabolism.model.HiddenZone attribute) (openalea.cnwgrass.cnmetabolism.model.Phloem attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.cnmetabolism.model.Roots attribute) (openalea.cnwgrass.growth.parameters.OrganInit attribute) (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementInitCompartments attribute) (openalea.cnwgrass.morphogenesis.parameters.ElementInit attribute) (openalea.cnwgrass.morphogenesis.parameters.HiddenZoneInit attribute) SUCROSE_MOLAR_MASS (in module openalea.cnwgrass.hydraulics.parameters) sum_respi (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.cnmetabolism.model.Roots attribute) SurfacicProteins (in module openalea.cnwgrass.gasexchange.parameters)

T

T_INDEX (in module openalea.cnwgrass.cnmetabolism.postprocessing) (in module openalea.cnwgrass.hydraulics.postprocessing) (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) t_offset (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) tb (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) tb_IN (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) tbase (openalea.cnwgrass.hydraulics.parameters.HiddenZoneParameters attribute) te (openalea.cnwgrass.growth.parameters.Parameters attribute) (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) te_IN (openalea.cnwgrass.growth.parameters.Parameters attribute) (openalea.cnwgrass.growth.parameters.ParametersHydraulics attribute) (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) temperature (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementInitCompartments attribute) tend (openalea.cnwgrass.hydraulics.parameters.HiddenZoneParameters attribute) thickness (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.InternodeElementInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.LaminaElementInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.SheathElementInitCompartments attribute) time_grid (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) time_step (openalea.cnwgrass.cnmetabolism.simulation.Simulation attribute) (openalea.cnwgrass.hydraulics.simulation.Simulation attribute) TL_ratio (openalea.cnwgrass.hydraulics.parameters.HiddenZoneParameters attribute) tm (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute)

tm_IN (openalea.cnwgrass.morphogenesis.parameters.Parameters attribute) tmax (openalea.cnwgrass.hydraulics.parameters.HiddenZoneParameters attribute) to_dataframe() (in module openalea.cnwgrass.gasexchange.converter) to_dataframes() (in module openalea.cnwgrass.cnmetabolism.converter) (in module openalea.cnwgrass.growth.converter) (in module openalea.cnwgrass.hydraulics.converter) (in module openalea.cnwgrass.morphogenesis.converter) (in module openalea.cnwgrass.senescence.converter) Total_Organic_Nitrogen (openalea.cnwgrass.cnmetabolism.model.HiddenZone attribute) (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.cnmetabolism.model.Roots attribute) Total_Transpiration (openalea.cnwgrass.cnmetabolism.model.Axis attribute) Total_Transpiration_turgor (openalea.cnwgrass.hydraulics.model.Axis attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrgan attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.model.Phytomer attribute) total_water_influx (openalea.cnwgrass.hydraulics.model.Phytomer attribute) Tr (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.PhytomerInitCompartments attribute) Transpiration (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) triosesP (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) TRIOSESP_MOLAR_MASS_C_RATIO (openalea.cnwgrass.cnmetabolism.model.EcophysiologicalConstants attribute) Ts (openalea.cnwgrass.cnmetabolism.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementInitCompartments attribute) turgor_water_potential (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementInitCompartments attribute)

U

Unloading_Amino_Acids (openalea.cnwgrass.cnmetabolism.model.HiddenZone attribute) (openalea.cnwgrass.cnmetabolism.model.Roots attribute) Unloading_Sucrose (openalea.cnwgrass.cnmetabolism.model.HiddenZone attribute) (openalea.cnwgrass.cnmetabolism.model.Roots attribute)

update_shared_dataframes() (openalea.cnwgrass.integration.caribu_facade.CaribuFacade method) update_shared_MTG() (openalea.cnwgrass.integration.caribu_facade.CaribuFacade method) Uptake_Nitrates (openalea.cnwgrass.cnmetabolism.model.Roots attribute)

V

VANT_HOFF_AMINO_ACIDS (in module openalea.cnwgrass.hydraulics.parameters) VANT_HOFF_SUCROSE (in module openalea.cnwgrass.hydraulics.parameters) Vmax_roots_growth() (openalea.cnwgrass.growth.parameters.Parameters method)

VMAX_ROOTS_GROWTH_POSTFLO (openalea.cnwgrass.growth.parameters.Parameters attribute) VMAX_ROOTS_GROWTH_PREFLO (openalea.cnwgrass.growth.parameters.Parameters attribute) VMAX_ROOTS_GROWTH_SEMINALS (openalea.cnwgrass.growth.parameters.Parameters attribute) VSTORAGE (in module openalea.cnwgrass.hydraulics.parameters)

W

water_content (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrgan attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.model.Phytomer attribute) (openalea.cnwgrass.hydraulics.model.Soil attribute) water_influx (openalea.cnwgrass.hydraulics.model.Axis attribute) (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrgan attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.model.Phytomer attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementInitCompartments attribute) WATER_MOLAR_MASS (in module openalea.cnwgrass.hydraulics.parameters) water_outflow (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementInitCompartments attribute) water_potential (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.model.Soil attribute) (openalea.cnwgrass.hydraulics.model.Xylem attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.XylemInitCompartments attribute)

water_potential_crit (openalea.cnwgrass.growth.parameters.ParametersHydraulics attribute) width (openalea.cnwgrass.hydraulics.model.HiddenZone attribute) (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.parameters.HiddenZoneInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.InternodeElementInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.LaminaElementInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementInitCompartments attribute) (openalea.cnwgrass.hydraulics.parameters.SheathElementInitCompartments attribute) WL_ratio (openalea.cnwgrass.hydraulics.parameters.HiddenZoneParameters attribute) Wmax (openalea.cnwgrass.hydraulics.model.PhotosyntheticOrganElement attribute) (openalea.cnwgrass.hydraulics.parameters.PhotosyntheticOrganElementInitCompartments attribute)

X

Xylem (class in openalea.cnwgrass.hydraulics.model) (class in openalea.cnwgrass.hydraulics.postprocessing) XYLEM_INIT_COMPARTMENTS (in module openalea.cnwgrass.hydraulics.parameters)

XYLEM_PARAMETERS (in module openalea.cnwgrass.hydraulics.parameters) XylemInitCompartments (class in openalea.cnwgrass.hydraulics.parameters) XylemParameters (class in openalea.cnwgrass.hydraulics.parameters)

Y

YG (openalea.cnwgrass.respiration.model.RespirationModel attribute)

YG_GRAINS (openalea.cnwgrass.respiration.model.RespirationModel attribute)